Nicolas Fernandez

Binary Transport Data Update Error

1

I am running into an error in PyDeck when I try to update a layer's data when using binary_transport equal to True. This error can be reproduced in the [`07...

bqplot not working in Jupyter Lab on MyBinder

6

**Describe the bug** bqplot is not working in Jupyter Lab on MyBinder (and on my local machine). However, my custom widget, Clustergrammer2, is working in Jupyter Lab on MyBinder. **To...

plot NaNs as grey matrix cells

1

Replacing NaNs with zeros using [swap_nan_for_zero](http://clustergrammer.readthedocs.io/clustergrammer_py.html#clustergrammer_py.Network.swap_nan_for_zero) should also enable visualizing NaNs as grey squares on the Clustergram.

Pass value-based categories from Clustergrammer-PY when Z-score normalizing rows/columns. The value-based-categories (calculated by Clustergrammer-PY) can be used for reordering, filtering, and even reversing the Z-score normalization on the front-end.

alpha shape multipolygon - is it expected behavior to have filled in holes?

10

Hi, I would like to know if it is expected behavior for the alpha shape to be returned with filled in holes? This example [colab notebook](https://colab.research.google.com/drive/1KCCnbwTvg-omi8Fz9UHq0bn1NSfTPl90?usp=sharing) illustrates this ``` from...

anndata reading error with version 0.8.0

11

Hi, Scanpy's `sc.read_h5ad` method appears to be having an error in how it is reading our AnnData HDF5 file when we use the new 0.8.0 version of the AnnData library:...

Hi I'm new to tippecanoe and I have a question about using layers for point data with different categories. I have a CSV file with millions of points of interest...

We would like to export the clustergrammer2 heatmap to a vector image so we can use it in illustrator.

@cornhundred I‘ve figured this out. It seems my dataframe is having index of dtype "Int64" and can't be rendered by Clustergrammer2 properly. I changed to normal python object dtype and...