Nicolas Fernandez

icon indicating a website link https://www.linkedin.com/in/nicolas-fernandez-32a0b84a

icon location Cambridge, MA icon location Computational biologist who is interested in multi-omics, single cell, spatial biology, AI/ML, and data visualization

Results 73 issues of Nicolas Fernandez

Zoom/Crop into selection via brush selection

Allow users to selection section of the heatmap to zoom into. ~~Do not actually crop into this section, but just zoom in. Need to be careful about tracking zoom with...

enhancement
help wanted

fix hardwiring of tooltip offsets

https://github.com/ismms-himc/clustergrammer-gl/blob/master/src/tooltip/display_and_position_tooltip.js#L36

UMAP buttons and animated transition

1 comment

Animate transition to and from UMAP for rows and columns when pressing appropriate reordering buttons.

enhancement
help wanted

Update Clustergrammer-GL Documentation

https://github.com/MaayanLab/clustergrammer-docs

issue using esm or bundled versions of parquet-wasm using esbuild

Hi, I am seeing errors when I try to import parquet-wasm using the bundler esbuild. Similar to this issue, https://github.com/kylebarron/parquet-wasm/issues/486, I am seeing this error ``` 94924d21-558e-468e-97d6-52e78f9ca56d:1552 Error loading data:...

Custom Widget built from cookie cutter not working in Jupyter Lab 3.0

Hi, I am having trouble getting a Jupyter Widget that was built by @thomasballinger using this template working in Jupyter Lab 3.0 (it works in Jupyter notebook) I raised the...

NBViewer link not working

NBViewer link not working https://nbviewer.jupyter.org/github/MaayanLab/clustergrammer-widget/blob/master/Running_clustergrammer_widget.ipynb

replace read_table with read_csv(sep='\t')

1 comment

Improve scrolling past heatmap, prevent zooming in when trying to scroll past

Users can accidentally zoom into heatmaps when trying to scroll past thrm. Currently users have to scroll on the side of the notebook.

enhancement

colorbar scale bug when making heatmap with all positive values followed by heatmap with positive and negative values

The colorbar scale is bugy when making heatmap with all positive values followed by heatmap with positive and negative values. The second heatmap with positive and negative values will show...