Nicolas Fernandez
Nicolas Fernandez
**Is your feature request related to a problem? Please describe.** I would like to try to use UMAP to project data down to one dimension, then rank the data points...
**Is your feature request related to a problem? Please describe.** Clustergrammer2 should be able to read/write from Zarr. This format can be used to store single cell gene expression matrices....
https://github.com/MaayanLab/clustergrammer-docs * need to update python API * document signature methods and other API updates
Add downloads per month etc badges to README.md - follow this example https://github.com/ismms-himc/ipython-file-upload/blob/master/README.rst Possibly switch from markdown to rst
Have the width of the widget be controllable as an input parameter and/or from the front-end. Also, add a full screen option.
Use existing infrastructure from [widget-ts-cookiecutter](https://github.com/jupyter-widgets/widget-ts-cookiecutter) to set up back-end and front-end testing. Start with Python I/O - see https://clustergrammer.readthedocs.io/matrix_format_io.html and https://github.com/ismms-himc/clustergrammer2/blob/master/examples/introduction_nb.ipynb
Save this information so that: - the front-end can on the fly re-calculate the original values - we can show the mean and variance as value based categories
Clear WebGL contexts when making a new widget. This will prevent crashing when many widgets are made in a single notebook.
We need to generalize row/column categories for rows/columns that are themselves clusters. The way we have tried to do this previously is to show the majority category followed by a...
**Describe the bug** My notebook that is hosted on GitHub is not loading on NBViewer **To Reproduce** Steps to reproduce the behavior: 1. Go to http://nbviewer.jupyter.org/github/ismms-himc/clustergrammer2_examples/blob/master/notebooks/2.0_CCLE_Gene_Expression.ipynb 2. The page is...