Nicolas Fernandez

is it possible to run cell detection on QuPath from paquo?

2

Hi, is it possible to run cell detection on QuPath from paquo?

We will try to switch the location based plotting to ScatterGL which uses WebGL to dynamically visualize lots of scatterplot data points. * allow pan/zoom * allow lasso selection *...

https://portal.brain-map.org/atlases-and-data/rnaseq#Previous_Data_Files

Make the following changes: * switch to WebGL * zoom/pan * selection via lasso

I need to add this example to the clustergrammer2-notebooks repo which has the latest version of all examples.

I'm sometimes seeing this error ``` IOPub data rate exceeded. The notebook server will temporarily stop sending output to the client in order to avoid crashing it. To change this...

Currently we are loading data from a CSV and we have to load the entire CSV into memory. Since this example is running on mybinder, which has limited memory ~1GB...

http://software.broadinstitute.org/gsea/msigdb/supplementary_genesets.jsp

bqplot not working in jupyter lab

1

https://github.com/bloomberg/bqplot/issues/884

10X released a dataset of ~100K CD8 T Cells, we should make an example notebook working with this data. We need to be careful to not add too much data...