darrin t schultz
darrin t schultz
This is still in `odp_genome_rearrangement_simulation`. Would be good to replace this with python.
One problem with doing this is the potential to use the wrong copy of the protein (if there truly are duplicates), given the reciprocal best hit approach. This will likely...
See also #49
Hi @sim3023 - at the moment this software is designed with genomes with multiple chromosomes in mind, and I have done no testing on prokaryotic genome assemblies. I'm not sure...
I have not yet made a Docker and I don't have any immediate plans to do so due to my time constraints. But thank you, that is a good idea!...
I removed some dependencies in a few pushes, including [f43566e](https://github.com/conchoecia/odp/commit/f43566e098c75cfb1ca76b4e273f35609f1a88e9)
`odp_genome_rearrangement_simulation` still requires seaborn for several plots
seaborn still required by one script, on this date - in `odp_genome_rearrangement_simulation`
Made one change that @zolotarovgl requested. `odp_nway_rbh` now produces ribbon diagrams. This also will be useful to previous issues that other users faced, #27, #29, #21. This feature uses the...
One problem with this is that the [random color generator that I implemented](https://github.com/conchoecia/odp/blob/5f147cba32d5329f51031b1173b7dc46e4acbf00/scripts/odp_color_manager.py#L308) generates colors that look like the palette of Candyland. Any ideas on how to make more appealing...