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IndexError: list index out of range
Could someone please help with the error?
snakemake --snakefile /home/snp/odp/scripts/odp -c1
Building DAG of jobs...
InputFunctionException in rule hmm_1_against_prots in file /home/snp/odp/scripts/odp, line 2133:
Error:
IndexError: list index out of range
Wildcards:
coloredby=BCnS_LGs
sample=mab
Traceback:
File "/home/snp/odp/scripts/odp", line 2161, in
snakemake --version is 7.32.4
config_file ignore_autobreaks: True # Skip steps to find breaks in synteny blocks diamond_or_blastp: "blastp" # "diamond" or "blastp" duplicate_proteins: "pass" # currently only "fail" or "pass". plot_LGs: True # Plot the ALGs based on the installed databases plot_sp_sp: True # Plot the synteny between two species, if False just generates .rbh files
species: mabref: proteins: /home/snp/odp/scripts/ref.faa chrom: /home/snp/odp/scripts/ref.chrom genome: /home/snp/odp/scripts/ref.fna minscafsize: 10 # Only plots scaffolds that are 10 bp or longer mab: proteins: /home/snp/odp/scripts/1046.faa chrom: /home/snp/odp/scripts/1046.chrom genome: /home/snp/odp/scripts/1046.fna minscafsize: 10 # Only plots scaffolds that are 10 bp or larger
Also, I am providing bacterial genomes as input. Can that be the reason for this error?