darrin t schultz

Maybe I can implement it such that python uses `bioawk` if it is available, but uses `Bio` otherwise and print a warning. That way everyone can still use the software...

Just dropped in to say that I encountered the same error when I attempted to build on Ubuntu 15 with commit [beb22ad](https://github.com/arq5x/poretools/commit/beb22ad5aeb4e9ba3b24cbc7dd168fbafd81cc4b). ``` ============================================================================ * The following required packages can...

After giving up with editing the Makefile, the SeqPrep.c file, and the utils.h file, I pulled the latest version of the repo (commit `488ef06`). I didn't edit anything, ran `make`,...

Hi @c-zhou, the bam was sorted by coordinates. I will change my pipeline to sort by reads next time (I used `samtools sort` without `-n`). These aren't my reads or...

Hi @andreaschavez - Thanks for the suggestion. This wasn't the case, unfortunately, as I was using a pipeline that referenced the same fasta reference for both mapping and YAHS correction.

I don't have any examples for that at the moment, unfortunately! I was working on it but got stuck with some unittest issues. Will try again soon. https://github.com/microsoft/vscode-python/issues/22940

I have never hit a segfault error! Very interesting. Can you please tell me which version of python you are using, and which version of matplotlib?

Hi @alejandrogzi - I appreciate that you took the time to do this! I have been meaning to learn some Rust, so I enjoyed going through the code to see...

Thanks for your comment! You will most likely have to parse the `.gff` file yourself with `bash`, `awk`, `sed`, `cut`, et cetera to create the `.chrom` file if the script...

Note - this should be fixed when decay-branch is folded in