Colin Diesh

Large amount of short reads bogs jbrowse down

1

Issues like this show that large amounts of data with small genomes e.g. covid can bog down the browser https://github.com/GMOD/jbrowse/issues/1524 There are some things that this module could possibly do...

Template PR for status callback, was worked on awhile ago but incomplete

could use bam-js machinery or become a separate module

Alternative naming conventions can be embedded in the BAM file via the SAM header

Latest lerna v7 does not use useWorkspaces flag

1

I noticed the eslint-plugin-import started failing after I upgraded to lerna 7 which removes the useWorkspaces flag This package I think detects the useWorkspaces flag to find packages though I...

Potential idea: turn into perl module?

1

If this library was structured using a "perl module" then JBrowse could potentially install it and use it in it's own scripts as part of a track loading pipeline

Minidot doing a self alignment and --no-self not working?

2

Hello! Thanks for the great tool. I was trying to align one fasta against another, but it seems like it is doing a self alignment despite adding the --no-self option...