Colin Diesh

Proposal: refactor JBrowseR to use dash_jbrowse

2

There is auto-generated R code in dash_jbrowse See https://github.com/GMOD/dash_jbrowse/blob/main/R/circularGenomeView.R This could be a way to unify the codebases, reduce maintenance burden

We currently make the user say --load inPlace if a user is loading a file and don't want to copy/move/symlink it This is when they use --load inPlace. The terminology...

Discussed in https://github.com/GMOD/jbrowse-components/discussions/4055

Avoid getFeatures refetch for some re-rendering operations

3

This is a challenge with our RPC architecture. In some ways points away from using RPC for rendering. If we change the height of e.g. the SNPCoverage track, it performs...

The ResizeBar helps helps you (horizontally) resize data grid columns, however, after you hide a column, it can become out of sync. The faceted selector actually handles it correctly but...

this page https://www.ncbi.nlm.nih.gov/snp/ links to https://ftp.ncbi.nih.gov/snp/ but i thik it is now https://ftp.ncbi.nlm.nih.gov/snp

I just thought I'd point out that the options argument with {timeout:number} is not passed along to the unpolyfilled version of requestIdleCallback https://developer.mozilla.org/en-US/docs/Web/API/Window/requestIdleCallback

Support for Content-Encoding:gzip(?)

2

Content-Encoding:gzip often confuses not just jbrowse but the web browser also In some limited cases, we can skip running pako unzip steps like this PR demonstrates and this will decode...

Uses the buffer package's readBigInt64LE instead

Htsget unable to fetch header from some endpoints

7

Ref ga4gh endpoint here https://github.com/samtools/hts-specs/pull/530 Rejects the bogus refname provided that we use currently Have to adjust to not specify any refname, but then it returns very large data chunks,...