Colin Diesh

Improve scalability of synteny datasets

1

Currently synteny datasets are loaded into memory entirely. The Dot tool (https://dot.sandbox.bio/?coords=https://storage.googleapis.com/sandbox.bio/dot/gorilla_to_GRCh38.coords&index=https://storage.googleapis.com/sandbox.bio/dot/gorilla_to_GRCh38.coords.idx&annotations=https://storage.googleapis.com/sandbox.bio/dot/gencode.v27.genes.bed) has a method to filter out unique and repetitive elements via a pre-processing script. We could consider loading...

Add canvas feature renderer

6

This is a draft PR for canvas feature rendering I am observing that SVG feature rendering is pretty slow in some cases especially if we are moderately zoomed out. the...

Create "example sessions" or "session templates"

1

A very common thing in bioinformatics tools, for demo purposes, is to have "example links" that auto fill out some forms and give you the output In our context, this...

The add track widget tries to optimize the user experience for adding a track, but it may be useful to have an option for the 'add track form' or similar...

Add ability to manually specify the adapter type from CLI

1

The code from the CLI currently assumes guessAdapterType is correct, it may be useful to have a override Maybe --adapterType flag More custom adapter types may need to use add-track-json...

Not sure what would be required but it may be a useful demo

I think it is not super useful to list http basic auth accounts in the FileSelector component They should prompt for authenticatation if needed, or login automatically if not. there...

Currently track is stuck in infinite loading stage Not sure if it's possible to detect this but would be handy