Chris Wright
Chris Wright
Thanks John, I've heard anecdotally that people are using `.` when they want to mean absent data (as common in VCF fields), but that's not quite the same as `NaN`....
@michaelmhoffman When the specification was written was it a deliberate choice to reference an outdated version of the IEEE document, that doesn't say anything about representation of NaN? Should BED...
I've not read through all of the JobMonitor code, is there a reason that the jobs aren't submitted collectively as a job array? The latter versions of grid engine provide...
Fair enough, I thought that might be the reason.
Hi @damioresegun @philres should be able to confirm, but I believe that at the time of writing this piepline, cuteSV categorised events as only `INS` or `DEL`. We'll have to...
As noted in the README, wub is no longer maintained or supported. If you provide details of what functionality you would like to use I can maybe direct you to...
Hi Jon, I think @aquaskyline has these. https://github.com/HKU-BAL/Clair3/blob/main/docs/guppy5.md Rerio contains only additional models for newer chemistries.
@SamStudio8 Do we have a before and after already? @aquaskyline which test set do you prefer fo these sorts of regression tests?
We used to experimentally support use of multiple datatypes in medaka, but we longer have the models trained to do this. What depth of sequencing do you have for the...
Hi Lucy, I believe I replied to you on the Nanopore Community. When you say it freezes, for how long does it freeze? The above is all output from minimap2,...