MicrobiomeStat

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generate_beta_test_single(): Error in colnames<-(*tmp*, value = colnames(lhs)) : attempt to set 'colnames' on an object with less than two dimensions

10

Thank you very much for this great package ! I encountered an error while running the tutorial: generate_beta_test_single() returns Error in `colnames

cami3

generate_alpha_change_test_pair(): Error in `dplyr::group_by()`: ! Must group by variables found in `.data`. ✖ Column `time` is not found.

7

This is my script: ``` generate_alpha_change_test_pair( data.obj = MicrobiomeData, alpha.obj = NULL, alpha.name = c("shannon", "simpson", "observed_species", "chao1", "ace", "pielou"), time.var = "TimePoint", subject.var = "Individual", group.var = "Treatment", adj.vars...

qqwxp

Example "Inspecting Paired Samples: Taxa Analysis" results in GUniFrac error

3

Hello, Thanks to the team for this package, the help/wiki is very straightforward, easy to follow and clear. I ran into an error trying to reproduce the tutorial "Paired Samples...

SciLiciumTheo

`MicrobiomeStat::generate_beta_test_single` represents errors

2

Hello, when I ran the [One-Click Reports Generation](https://www.microbiomestat.wiki/single-point-analysis/cross-sectional-reporting-microbial-analysis-reports-with-microbiomestat) by using `mStat_generate_report_single`, it showed the error information. ```markdown in `colnames

HuaZou

"$ operator is invalid for atomic vectors" when using mStat_import_biom_as_data_obj()

1

**Describe the Bug** Hello! I've been using this package as a huge resource in my project. It's incredibly easy to use and the graphs look great. However, I ran into...

pkirti33

Create Graphs/Analyses without Performing Rarefaction

10

Hello, I acknowledge that I have submitted several posts to this GitHub Discussions in the past few weeks, and I always appreciate your prompt and helpful replies! This package and...

pkirti33

mStat_generate_report_long() : Error in update_data_obj_count()

4

Dear Chen, I hope this message finds you well. I have encountered an issue while using the `mStat_generate_report_long()` function from the MicrobiomeStat package. Below is the script I am using,...

wode0000ai

error while running the generate_beta_trend_test_long function

2

**Describe the Bug** I encountered an error while running the generate_beta_trend_test_long function with my dataset. The error message is as follows: ``` error: number of observations (=108)

yejunbin

Maintain Sample Order Consistency in mStat_aggregate_by_taxonomy() Output

1

**Current Feature** The current mStat_aggregate_by_taxonomy() outputs where the sample order of the table is different from the sample order in the input table. This behavior is not documented, which can...

qqwxp

Weights for Samples of LinDA Modelling

2

I notice that the top-ranked bacteria are sometimes caused by outliers of `linda` analysis. This happens when some samples have five species and other species have fifty species detected, for...

DarioS