MicrobiomeStat
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generate_alpha_change_test_pair(): Error in `dplyr::group_by()`: ! Must group by variables found in `.data`. ✖ Column `time` is not found.
This is my script:
generate_alpha_change_test_pair(
data.obj = MicrobiomeData,
alpha.obj = NULL,
alpha.name = c("shannon", "simpson", "observed_species", "chao1", "ace", "pielou"),
time.var = "TimePoint",
subject.var = "Individual",
group.var = "Treatment",
adj.vars = NULL,
change.base = 1,
alpha.change.func = "absolute change"
)
My time.var
is "TimePoint". I got a error show that "Column time
is not found."
I have check the script of generate_alpha_change_test_pair()
function, and I see the variable time
first appears on line 30; before that, it was not defined (time.var was not assigned to it).