MicrobiomeStat

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Level of factor missing in output generate_alpha_trend_test_long() function.

3

Dear Chen Yang, Following issue #35, I have converted my Date_format column to a factor to be used as time.var in the generate_alpha_trend_test_long() function and it allowed for the function...

QGaelle

generate_alpha_trend_test_long giving fatal error, aborting R session

6

Thank you for this great package for longitudinal microbiome analyses. Every time I try to run the generate_alpha_trend_test_long function my R is crashing. it says "R encountered a fatal error,...

aherms12

generate_taxa_test_pair() issue with time.var = NULL in random effect

5

Dear developer, I am encountering an issue when using the generate_taxa_test_pair() function to test for random effect. When I use the basic linda function as below it works: linda.obj.all

16svale

handling the false discovery rate ("fdr")

1

Dear MicrobiomeStat developer, I have a question regarding the false discovery rate (FDR) correction. I see on the documentation that the linda() function already takes into account FDR. However, in...

16svale

generate_alpha_trend_test_long error(): error in vec_data() : ! x must be a vector, not a <sample_data> object.

3

Hi, thanks for a great package. I am not able to generate: generate_alpha_trend_test_long - see photo. generate_alpha_trend_test_long - error saying: error in vec_data() : ! x must be a vector,...

mariamaseng

Error "contrasts can be applied only to factors with 2 or more levels" while using generate_alpha_change_test_pair()

2

Hello, First of all, thank you for your work in MicrobiomeStat package. I have successfully created the MicrobiomeStat data object importing several .qza from QIIME2. While using generate_alpha_change_test_pair() , the...

BiggusDickus666

GMPR transformation function is missing

1

**Describe the Bug** When I try to normalise the data using the GMPR method, I get an error that says that GMPR function is missing **Reproducible Example** Sorry, to reproduce...

thecorz

microbiomestat ts.levels not plotting correctly in generate_taxa_areaplot_long

9

Hello, Thank you for the great tool! I am trying to visualise the change in taxas across multiple timepoints using generate_taxa_areaplot_long. However, in the visualisation, I am missing some (1)timepoints...

carmennns2

Cannot acces to data with generate_beta_ordination_pair object

4

Good morning/afternoon everyone, I have used MicrobiomeStat for a longitudinal study, especially I've used the method _**generate_beta_ordination_pair**_ to plot the Bray-Curtis distance overtime compared to inclusion in two groups, and...

ladrub

time.var = NULL, in mStat_generate_report_single () causes an error and stops rendering

2

Hi, I'm running into an issue with the mStat_generate_report_single() when I am using data without a time variable. Hoping you can help. Cheers Rachele **Describe the Bug** Trying to run...

RachBioHaz