Brent Pedersen comments

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                                            Brent Pedersen

Advance Python3/Python2 coinstallability

all tests are passing in pull16 now.

Advance Python3/Python2 coinstallability

if you get tests working, I'll be glad to incorporate.

one exon missing

what does `len(gene_obj.coding_exons)` show?

Correct handling of "D" in mask_left(), with new merge_softclipped_* functions

thanks! can you add a test for this?

Fixed all NANs when genes with all zeros. #11

I think you'd need something like: ``` (data != 0).sum(axis=1) > 0 ``` but since I haven't been looking at/using this code for some time, I'd require a test before...

How to call combat.py with no covariates

Hi @FrancescoBrundu I added a change that should allow you to do this. See the last 2 lines of the file for example use. Let me know if you have...

Figure out what needs to be done for Python 3 compatiblity

+1, i'm converting the easy stuff like print statements today.

Figure out what needs to be done for Python 3 compatiblity

I can't remember. I will try to remove it. I will plan to use six for most stuff.

Figure out what needs to be done for Python 3 compatiblity

@dylkot can you try the py3 branch?

invalid syntax?

I haven't worked on cruzdb for some time. It's likely that there are many parts of it that do not support python3. I'd accept a pull request to fix that.