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Published 20 hours ago • verified publisher icon brentp

Advance Python3/Python2 coinstallability

Open lbeltrame opened this issue 10 years ago • 12 comments

These commits should fix most of the Python3 issues.

However I cannot run any unit test as UCSC via MySQL is blocked at my institution, so I do not know if everything passes.

lbeltrame avatar Apr 28 '14 13:04 lbeltrame

Ping?

lbeltrame avatar Jun 04 '14 09:06 lbeltrame

sorry i missed this earlier. as far as I can see. mysql-python is not supporting python3: https://pypi.python.org/pypi/MySQL-python/1.2.5 so all of the tests fail. I may have time to look into this further next week.

brentp avatar Jun 04 '14 16:06 brentp

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512

An alternative could be to use oursql for Python 3. -----BEGIN PGP SIGNATURE----- Version: APG v1.1.1

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lbeltrame avatar Jun 04 '14 16:06 lbeltrame

I updated this here: https://github.com/brentp/cruzdb/tree/pull16 wasn't sure how to push to a pull request. Still having trouble with python3 and oursql

brentp avatar Jun 09 '14 16:06 brentp

What are the issues? I can try to look at them myself.

lbeltrame avatar Jun 10 '14 07:06 lbeltrame

all tests are passing in pull16 now.

brentp avatar Jun 10 '14 12:06 brentp

Did this integration lose it's way? I'd be happy to pick it back up to complete a Python 3 installation.

willgdjones avatar Aug 21 '19 17:08 willgdjones

if you get tests working, I'll be glad to incorporate.

brentp avatar Aug 21 '19 18:08 brentp

The changes don't seem to have been incorporated in the version available for download. Has this effort been abandoned?

parcbioinfo avatar Jun 29 '20 19:06 parcbioinfo

I tried - but didn't get it working.

willgdjones avatar Jun 29 '20 20:06 willgdjones

I am trying what is in https://github.com/brentp/cruzdb/tree/pull16 now. Will see if it works.

parcbioinfo avatar Jun 29 '20 20:06 parcbioinfo

I am trying what is in https://github.com/brentp/cruzdb/tree/pull16 now. Will see if it works. I got further but it still doesn't work. It looks for oursql. However, I haven't been able to install oursql with Python 3.

parcbioinfo avatar Jun 29 '20 23:06 parcbioinfo