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Correct handling of "D" in mask_left(), with new merge_softclipped_* functions

Open ahstram opened this issue 3 years ago • 1 comments

Correct handling of "D" in mask_left(), with new merge_softclipped_deletions() and merge_softclipped_insertions() functions to ensure "S" operations are not immediately followed by "D", "N", "I" or "P"

This should address issue #3

Note: I did not consider whether corresponding merge_hardclipped_* functions are also necessary

ahstram avatar Feb 20 '21 22:02 ahstram