Brent Pedersen

Hi, the output in the html file is always colored by the --ped given, even with inference. So, after inference to see the output in the html, you must re-run...

just adding that flag causes zip_open not to error, but it doesn't resolve the underlying issue. not sure how to fix.

that seems fine, but I can't get it to work even with that flag. the file will open, but I can't extract. I'll look into it more.

http://home.chpc.utah.edu/~u6000771/gnomad.v3.genome.zip here is a test archive. the first file in the archive has a compressed size > 4.2GB. which i think is creating additional problems.

Hi, the releases page indicates that the RNA sites file is different coordinates from the others: https://github.com/brentp/somalier/releases/tag/v0.2.16 I updated that last week and made it more clear, I think. I've...

thank you! @alexiswl does this work for you? if so I'll add to the sites in the releases.

@alexiswl , I think it's best to re-extract with a pair of matching sites.

yes. looks like you're right. not sure how this has escaped noticed for so long. that'd be great if you updated to include OldSnpEff.

hi, thanks for looking into this. re the gemini note. I think it's doing the right thing. the `top_impact` is stored in the variants table. and it will have the...

hi, you can add a '#' to the start of your header line so that comb-p knows it's a header.