Brent Pedersen

Results 1162 comments of Brent Pedersen

probably the best way is to get the binaries from here: https://github.com/nim-lang/nightlies/releases/tag/latest-version-1-6 in the recipe

is it getting unzipped and installed by some bioconda magic? I would think you'd need to unzip and then update the path to point to the bin directory.

that does the trick. can genome_fn be a required argument to avoid this?

got it. would you consider adding _orig_pool kwag to random_op. it'd be nice be able to keep re-using a pool if I'm running this across multiple pairs of bed files.

I much prefer the former.

sorry for putting this in this thread, but it's another open file error. if i stream, it must be leaving open the process? ``` Python from pybedtools import BedTool a...

i tried a number of things including `__del__`, but can't get it to work. it doesn't collect them until the program terminates... Streaming over the results does prevent the error...

I don't know anything about windows. Should windows work with the static section?

@vitty0513 can you report the exact error you are seeing? smoove expects there to be a `Name=` field in the gff, it doesn't look like yours has this.

The error message isn't very helpful, but you'll need a gff with a `Name` attribute for smoove to work.