brainglobe-segmentation
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brainglobe
Segmentation of anatomical structures in a common coordinate space
There are some problems that would fit this tool, but cannot be performed on downsampled data, such as segmenting out total labelled cell volumes (see [image.sc post](https://forum.image.sc/t/use-registered-atlases-from-brainreg-for-segmentation-in-imaris/86206/52)). It would be...
**Describe the bug** Can't `pip install` on Silicon Mac - fails with HDF5 related problem. At its root this is a problem with `pip install tables`. **To Reproduce** * create...
The testing of the GUI functionality is a bit hacky. There are `sleep()` calls, and we don't test the button clicking and the desired functionality separately. --- Based on comments...
It would be great to have a table of segmented tracks/regions that the plugin will analyse. These can be inspected, deleted etc.
**Is your feature request related to a problem? Please describe.** In https://github.com/brainglobe/brainreg-segment/pull/74 I noticed that several `print` statements are used throughout the code as a form of logging. **Describe the...
From Paul Smith @ ARC - > so it turns out the tooltip functionality is added automatically when setting the features…the user just needs to set tooltips to visible by...
Currently `brainreg-napari` saves data to disk, which then has to be loaded by the `brainreg-segment` plugin. Instead it should be possible to use `brainreg-segment` directly with already loaded and registered...
Now brainreg-segment is a plugin, it should leave the napari viewer alone, and things like disabling buttons should be removed.
They shouldn't hang around anywhere and be included in the analysis.
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Segmentation of anatomical structures in a common coordinate space