brainglobe-atlasapi

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bg-atlasapi.utils.retrieve_over_http` - percentage not updating

2

Not exactly the highest priority, but when I used `bg-atlasapi.utils.retrieve_over_http`, it works fine, but the percentage doesn't update

adamltyson

whs_sd_rat_39um atlas axes are mixed up

1

Few days ago i raise an issue on Brainrender repos about a issue with using the slice command and the camera positioning : https://github.com/brainglobe/brainrender/issues/204#issuecomment-1100002950 The axes from this Atlas seems...

LSeu-Open

`.obj` works well, but the `mesh` directories can get large. Using newer formats could improve this a lot. [Draco](https://google.github.io/draco/) looks promising.

adamltyson

kim_mouse atlas plots only one hemisphere in brainrender

1

Using kim_mouse_50um, for which scaling issues have been solved (see #94), individual brain regions plot in only one hemisphere or the other. Consider this snippet: ``` from brainrender import Scene...

alowet

Consider removing the human atlas

1

The human atlas is not perfect, when I created it I didn't finish everything correctly so the meshes have some problems (e.g. origin/scale.. ). Since I didn't see much interest...

FedeClaudi

kim mouse atlas meshes are scaled incorrectly

3

I think each set of meshes is consistent, but they are scaled incorrectly, so they don't play nicely with external data.

adamltyson

Configurable config & atlas location

6

It seems like $HOME/.brainglobe is hardcoded as the default location for atlas downloads. I would like to be able to change this, but it seems that /site-packages/bg_atlasapi/bg_config.conf is the hardcoded...

chrisroat

List of available atlases

6

We have the `brainglobe list` command to list all available atlases, and some are on the [online docs](https://docs.brainglobe.info/bg-atlasapi/introduction), but perhaps it would be best to expand upon this list (and...

FedeClaudi

Credit atlas packagers

3

Currently, those who generated the original atlas files are credited, but not those who bring it into BG. These should be credited in the metadata and readme. Ideally, we should...

adamltyson

Moving toward better atlas versioning

1

This issue comes from a long discussion that I had with @nickdelgrosso on those points. Will lay it out in full here, so that we can discuss it better at...

vigji