brainglobe-atlasapi

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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10603261/

adamltyson

adamltyson

adamltyson

**Is your feature request related to a problem? Please describe.** The cave fish atlas is currently not available via BrainGlobe. **Describe the solution you'd like** We'd like the [cave fish...

alessandrofelder

https://elifesciences.org/articles/87029 From a glance it looks v high quality.

adamltyson

http://www.3dbar.org:8080 looks to be a nice resource with many atlases already in a standardised format. There should be something useful we can do with these atlases, or move towards a...

adamltyson

Add all 3D Multimodal Developmental Mouse Brain atlases

1

We already have `kim_dev_...`, but we should add all the different developmental stages now they've been released (and maybe rename them). Ideally we would have one script that packages them...

adamltyson

kim mouse atlas meshes are scaled incorrectly

3

I think each set of meshes is consistent, but they are scaled incorrectly, so they don't play nicely with external data.

adamltyson

Atlas name could be improved for anistropic atlases

3

At this line, the atlas name uses the first resolution value: https://github.com/brainglobe/bg-atlasgen/blob/f944baaf69004aca270c29dee50592369969db72/bg_atlasgen/wrapup.py#L111 This isn't particularly useful for non-isotropic atlases, but I'm not sure what would be better.

adamltyson

`.obj` works well, but the `mesh` directories can get large. Using newer formats could improve this a lot. [Draco](https://google.github.io/draco/) looks promising.

adamltyson