biolink-model
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biolink
Schema and generated objects for biolink data model and upper ontology
In short, we need to define a standard pattern for representing references to publications/documents that describe the method used to generate knowledge expressed in an edge. The use case behind...
**Is your feature request related to a problem? Please describe.** In ChEMBL there are activities data that we would like to represent in MolePro and Translator: https://www.ebi.ac.uk/chembl/g/#browse/activities/filter/molecule_chembl_id%3A(%22CHEMBL25%22) **Describe the solution...
**Question:** How to represent components that can be present in complex mixture, for example: |subject|relation|object| |---|---|---| |FENNEL OIL |CONSTITUENT ALWAYS PRESENT->PARENT |ANETHOLE| |FENNEL OIL |CONSTITUENT MAY BE PRESENT->PARENT |FENCHONE, (-)-|...
added "PMC" to the end of the namespace for expanding the PMCID prefix to "PMCID": "http://www.ncbi.nlm.nih.gov/pmc/PMC", to address #1366.
**Question:** I was looking for guidance on making/editing infores catalog entries for #1391, and I looked at https://github.com/biolink/biolink-model/blob/master/guidelines/information-resource-registry.md. However, this seemed outdated: * discusses a `url` field, when it looks...
Multiomics has infores id's for their underlying source of EHR data, which are not directly exposed in Translator. COHD and ICEES do not, but rather capture this information on the...
We need to further constrain the [association](https://github.com/biolink/biolink-model/blob/cfd18406cb7b6d2d2e04935b159c03cf5fefdaeb/biolink-model.yaml#L9405) classes so that an association with subject|object_direction_qualifier and no subject|object_aspect_qualifier would be invalid. there are likely other constraints we want to add here...
In https://github.com/biolink/biolink-model/blob/master/biolink-model.yaml#L6678C17-L6678C17, `STY:122` (the UMLS semantic type for "Biomedical or Dental Material", abbreviation "bodm") is mapped to `biolink:device`. I just want to ask that someone take a second look at...
For folks wanting to ingest infores catalog, exclude list from SEMMED, it would be better if these were included in the pypi distribution.
See: https://github.com/linkml/linkml/issues/1512 and bioregistry: