biolink-model

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what is correct predicate to find protein domains from a protein ID?

7

Hello, I would like to get `biolink:ProteinDomain` from a `biolink:Protein`. I do not know if `biolink:has_member` would be the correct predicate? Also, I tried to search from protein ID (with...

sandrine-m

Move mappings for deprecated interaction predicates

1

**Is your feature request related to a problem? Please describe.** I want to update our predicate mapping code in bl_lookup to handle biolink 3. For qualifiers, some of this mapping...

cbizon

request for new types in BL

4

**Is your feature request related to a problem? Please describe.** - We want to add new types under `biolink:InformationContentEntity` - `biolink:Studies` - `biolink:Variables` - `biolink:CDE` (`biolink:CommonDataElements`) These types would be...

YaphetKG

Two pairs of 'inverse' predicates have no canonical_predicate specified?

4

**Question:** This question relates to these two pairs of inverse predicates in Biolink 3.0.3: 1. `increases activity of` / `activity increased by` 2. `positively regulates` / `positively regulated by` For...

amykglen

**Is your feature request related to a problem? Please describe.** In biolink 2.x, there are mappings for RO:0002213 to etc. positively regulates. But that is now a deprecated predcate, replaces...

cbizon

What kind of 'type' should be captured in the Attribute.value_type_id field.

3

The TRAPI Attribute object includes a `value_type_id` afield to indicate the "type" the thing reported in the 'Attribute.value` field. We need to decide if we would like this field to...

mbrush

distribute biolink-model.yaml with pypi distribution

2

this will be done when we finish the move to the new linkml docgen framework where we will reorg this repo to be in line with the rest of the...

sierra-moxon

Suggestions: 1) Add new children of `has_participant`, 2) Create sequence of events; Question about ttl files

1

### Discussed in https://github.com/biolink/biolink-model/discussions/1045 Originally posted by **0m1n0** June 24, 2022 Dear Biolink team, I have some suggestions to expand Biolink Model vocabularies. ### 1. Add some more children to...

nlharris

It's easy to vote for your favorite feature, or increase the priority of a bug or other issue. Follow this [LINK](https://github.com/biolink/biolink-model/issues?q=is%3Aissue+is%3Aopen+sort%3Areactions-%2B1-desc) where all the features are sorted by popularity Open...

sierra-moxon

Add CHEBI:is_a as an exact mapping for biolink:subclass_of

8

**Is your feature request related to a problem? Please describe.** We are mapping ChEBI hierarchy to Biolink **Describe the solution you'd like** Add `CHEBI:is_a` as an exact mapping for `biolink:subclass_of`...

vdancik