biolink-model
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biolink
Schema and generated objects for biolink data model and upper ontology
Rumour has it that this subtree of predicates should no longer be of type `mixin`? Howeve,r several of these child subclasses are `deprecated: true` now so perhaps this is a...
**Describe the bug** The list of association slots reported at https://biolink.github.io/biolink-model/docs/association_slot.html does not seem to include slots that are children of another association slot. **To Reproduce** For example, 'knowledge source'...
Hi @sierra-moxon, thanks for the great input yesterday! As you suggested, I will file a feature request for the data model supporting validation directly. I am not sure how exactly...
**Is your feature request related to a problem? Please describe.** We're currently working on incorporating macromolecular complexes from the [EBI Complex Portal](https://www.ebi.ac.uk/complexportal/) into Babel (https://github.com/TranslatorSRI/Babel/issues/54; https://github.com/TranslatorSRI/Babel/pull/55). We intend to include...
In order to clear out deprecated predicates, we need to find as many places for existing mappings as possible. This might also help fix #1070 where we need to move...
**Question:** What is the appropriate Biolink Model slot for a URL associated with a node? MolePro encountered a data item called "reaction_url" (e.g., https://reactome.org/PathwayBrowser/#/R-MMU-5655466) in the database of Reactome (https://reactome.org/)....
**Describe the bug** Missing enum for `highest FDA approval status` and `drug regulatory status world wide` **Expected behavior** Restore `FDAApprovalStatusEnum` from a previous Biolink version or or define a new...
From @colleenXu: Is it a bit inconsistent for the prefix PHARMGKB.PATHWAYS to be plural like this (vs KEGG.PATHWAY)? asking for clarification: - is it more correct to have different prefixes...
A clear and concise description of what the request is. I am trying to generate knowledge graphs between micro-organisms and the media they thrive on. - I want to add...
**Is your feature request related to a problem? Please describe.** Representing active metabolites in Inxight:Drugs: https://drugs.ncats.io/drug/Q3JTX2Q7TU **What working group (or team) did this request originate from?** MolePro **Describe the solution...