biolink-model

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canonical_predicate meta-predicate should have its own documentation page

2

The 2.0 release docs https://biolink.github.io/biolink-model/Migration_2.0_Guide.html has ``` Inverses added inverses for the majority of biolink predicates. primary direction of predicate tagged with ‘biolink:canonical_predicate’. ``` this is v nice, and it's...

cmungall

Question, should the biolink curie map be a bimap?

1

Currently there are two references assigned to multiple prefixes: - 'http://www.kegg.jp/entry/' - 'http://purl.obolibrary.org/obo/RO_'

kshefchek

https://docs.google.com/spreadsheets/d/1Ak1hRqlTLr1qa-7O0s5bqeTHukj9gSLQML1-lg6xIHM/edit#gid=293462374

sierra-moxon

organize association_slot children

4

`association_slot` currently has the following children: - association type - association➞id - change is catalyzed by - clinical modifier qualifier - edge label - frequency qualifier - has confidence level...

andrewsu

**Is your feature request related to a problem? Please describe.** How to model the relationship where two things are similar to each other **due to shared annotations/associations with other things**...

colleenXu

Where do we officially document, with indexing, Biolink modelling for specific scientific use cases?

1

Our primary Biolink Model documentation is extremely helpful, but we (yet) seem to have a systematic repository of examples of using the Biolink Model for specific scientific use cases. This...

RichardBruskiewich

We'd like to return the following edge properties in the @balhoff's ontology KP when available: asserted/inferred direct/indirect I think this was an effort to help track provenance for a particular...

sierra-moxon

Add an attribute to add specificity in ontology hierarchy, including distinguishing 'entities' from 'groupings'

1

Proposal: 1. a general purpose attribute that can be used on nodes that correspond to ontology classes to indicate "level" in the hierarchy 2. a vocabulary or vocabularies to use...

cmungall

Generated UML diagrams are too busy

4

Ex: https://biolink.github.io/biolink-model/docs/GeneToExpressionSiteAssociation.html Certain elements in the diagram are not properly legible.

deepakunni3

Add examples into schema

1

Add example URIs, ideally these would resolve to something browsable, e.g. @vemonet's graphdb

cmungall