qurro
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biocore
Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
TLDR: certain browsers (looking at you [Chrome](https://www.google.com/search?q=chrome+max+canvas+size)) impose maximum canvas size restrictions, which can lead to weird crashes (frustratingly, without any context). This is described at vega/vega-lite#4974. It may be...
We don't currently check that, e.g., the values in the input BIOM table are within the "representable" range for JavaScript (which iirc is -2^53 + 1 to 2^53 - 1,...
Note that Qurro's text searching is case *insensitive* while currently Qarcoal is case *sensitive* (uses `pd.Series.str.contains`). Should deal with this in Qarcoal - probably easiest to just add an optional...
Brought up on the [Q2 forums](https://forum.qiime2.org/t/plugin-to-generate-feature-log-ratios-by-textual-searching-a-la-qurro/12388/4?u=gibsramen). Currently, given a numerator and denominator string to search, Qarcoal only outputs the sum of features in the numerator and the denominator. Would be...
Jamie's suggestion. **Edit:** for reference, this would let Qurro use the same definition of ``balance'' as is shown in the [Selbal paper](https://msystems.asm.org/content/msys/3/4/e00053-18.full.pdf). This should be doable in Qurro's JS by...
As brought up in #251, and as shown in one of the figures in [this paper](https://www.biorxiv.org/content/biorxiv/early/2019/10/16/804443.full.pdf). Supporting highlighting the rank plot arbitrarily in the JS application would require some pretty...
If the user passes in an empty value in the sample metadata, it'll get stored throughout Qurro as a plain null value. However, it's also allowed for the user to...
since SILVA taxonomies don't have spaces... this makes it hard to view this info in tooltips ._. - [ ] Add a function to `_metadata_utils` (or df_utils, doesn't really matter)...
So that you could just select log-ratios by looking at text searching, etc. Brought up at code review last Monday.