qurro
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biocore
Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
This seems to be due to dependencies, because the rest of the code should support Python 3.6 up until (but not including) Python 3.10. I don't mind the >= 3.7...
Hi all **Describe the bug** An error occurs during installation: `ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the...
Update the README to specify which Qurro version should be installed based on your QIIME 2 version
See the discussion [here](https://github.com/biocore/songbird/issues/166#issuecomment-1518491954). Option 1: adjust the "system requirements" section (maybe put this beforehand, and just have the system requirements section talk about python version & browsers?) > ##...
I'm trying to generate reports on some metabolomics datasets with 40K dimensions, and I'm noticing that qurro is able to load this massive datasets. Not sure if others have had...
Continuation of ideas sketched out in #11.
We're doing this for Empress (https://github.com/biocore/empress/issues/130), and I'm realizing this might be useful to have in Qurro as well. This would mean converting the feature metadata from something like |...
Will need to of course double-check that this doesn't break any tests. Will also need to remove the use of "rangeStep" in the rank plot's x-axis-scale—turns out that this has...
It would be super useful if one could export multiple selections out of Qurro. Ex., currently I select top/bottom 10 features as my log ratios and can export these for...
Not a big deal or anything, but it might be nice to add some extra context (e.g. another tutorial notebook) about using Qurro in a more ML-ish style—where differential abundance...
From @mortonjt's comment in #218— >Would this add in the possibility of pseudocounts? There are some scenarios where this can be very helpful. (#208) > >An even better option would...