gemelli
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biocore
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse...
Modifies main Joint-RPCA code slightly to now save a mapping of which feature is from which modality (table). Adds some code to create a simple network using NetworkX. @cameronmartino What...
I am trying to follow the CTF method step-by-step using the gemelli package and tutorial. While I implement robust-centered log ratio (rclr), `from gemelli.preprocessing import rclr`, it gives me an...
Sorry to bother you today! This is a very small bug that tripped up a collaborator for a moment
I was surprised to discover that `pip install gemelli` silently failed to install some files. I've never seen this before... This folder was missing: https://github.com/biocore/gemelli/tree/master/gemelli/q2/qc_assests Along with this file: https://github.com/biocore/gemelli/blob/master/gemelli/q2/qc_assests/index.html...
This feature, through, experimental, is helpful! Is there any way to enable it in the current release on pip? Here's the feature I'm thinking of from another emperor plot.