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[WIP] Add simple visualization for Joint-RPCA networks

Open gibsramen opened this issue 1 year ago • 0 comments

Modifies main Joint-RPCA code slightly to now save a mapping of which feature is from which modality (table). Adds some code to create a simple network using NetworkX.

@cameronmartino What do you think of the proposed changes to the main Joint-RPCA code?

TODO:

  • [ ] Add QIIME2 support
  • [ ] Discuss user-input of table names
  • [ ] Handling for duplicate IDs (i.e. same feature name in multiple tables)
  • [ ] Plotting options
  • [ ] Update tests
  • [ ] New tests
  • [ ] Documentation updates/additions

image

Eventually I think it would really cool to have an interactive 3D network using something like Plotly but that's a whole new project.

gibsramen avatar Dec 14 '22 18:12 gibsramen