gemelli
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biocore
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse...
hi, there's a simple misprint in the header to [this section](https://github.com/biocore/gemelli#repeated-measures-study-ie-one-sample-per-subject-with-ctf) which I think should say multiple samples per subject cheers
Hey @cameronmartino, A little feature-request: `QIIME 2 Plugin 'gemelli' version 0.0.8 (from package 'gemelli' version 0.0.8)` `q2cli version 2021.8.0` In the example below, my table ends up with 5 fewer...
Hello Cameron, I am trying to use CTF on some analysis and I am trying to install it on a fresh python3 environment without qiime2. I used the `pip install...
Hey @cameronmartino, In the past I've used QIIME 2 to create the species/sites biplot using gemelli's phylo-/RPCA. This biplot is of course unconstrained by env variables, which leaves much to...
Need to add a CI with no Q2 env. that tests only standalone commands.
Is the rank of feature in CTF means the importance of features, just like rank in PCA? In 2.2.0-compare-feature-ranks/1.0.0-rankings.ipynb, what is the reason of claiming 'pos in both is more...
Hi, Sorry if this is a naive question but i'm not familiar with the methods used in gemelli and having a bit of trouble understanding how exactly the method works....
I've been playing around with CTF and have occasionally noticed the following error ``` Traceback (most recent call last): File "/home/juermieboop/miniconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/q2cli/commands.py", line 329, in __call__ results = action(**arguments) File "",...