uta

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enable multiple alignments per <tx,ref,method>

1

**Originally reported by Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece)) in [biocommons/uta](https://bitbucket.org/biocommons/uta/) [#160](https://bitbucket.org/biocommons/uta/issue/160)** Migrated by [bitbucket-issue-migration](https://github.com/reece/bitbucket-issue-migration) on 2016-09-09 15:15:07 --- UCSC provides multiple BLAT alignments for some transcripts. The current UTA...

reece

**Originally reported by Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece)) in [biocommons/uta](https://bitbucket.org/biocommons/uta/) [#155](https://bitbucket.org/biocommons/uta/issue/155)** Migrated by [bitbucket-issue-migration](https://github.com/reece/bitbucket-issue-migration) on 2016-09-09 15:15:07 --- The goal is a minimal api via views for the purposes...

reece

**Originally reported by Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece)) in [biocommons/uta](https://bitbucket.org/biocommons/uta/) [#146](https://bitbucket.org/biocommons/uta/issue/146)** Migrated by [bitbucket-issue-migration](https://github.com/reece/bitbucket-issue-migration) on 2016-09-09 15:15:07 --- # Links - **imported from**: [CORE-146](https://invitae.jira.com/browse/CORE-146) (Invitae access required)

reece

**Originally reported by Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece)) in [biocommons/uta](https://bitbucket.org/biocommons/uta/) [#143](https://bitbucket.org/biocommons/uta/issue/143)** Migrated by [bitbucket-issue-migration](https://github.com/reece/bitbucket-issue-migration) on 2016-09-09 15:15:07 --- and modify loader.py to update the log when operations complete. #...

reece

**Originally reported by Reece Hart (Bitbucket: [reece](http://bitbucket.org/reece), GitHub: [reece](http://github.com/reece)) in [biocommons/uta](https://bitbucket.org/biocommons/uta/) [#138](https://bitbucket.org/biocommons/uta/issue/138)** Migrated by [bitbucket-issue-migration](https://github.com/reece/bitbucket-issue-migration) on 2016-09-09 15:15:07 --- load lrg sequences using Rudy's script # Links - **imported from**:...

reece

Our team developed documentation on how to install UTA locally on Mac in [VRS-Python](https://github.com/ga4gh/vrs-python/blob/main/docs/setup_help/uta_installation.md). We should migrate it to this repo. It would also be nice to improve the README's...

korikuzma

solved

2

a

asmlgkj

Consider standardized schema for transcripts

3

It would be useful to have a consensus schema for what a transcript is. Prior art includes (but is certainly not limited to) - a branch somewhere in biocommons by...

holtgrewe

Lately I've been trying to understand how to interpret CIGAR strings in UTA and running into some confusion. This might just be due to some incorrect assumptions about CIGAR, but...

budsonjelmont

Database download as JSON?

1

Hello, Am attempting to assess performance of UTA vs other transcript databases, do you have a JSON download? Thanks, Drew

DGMichael