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Consider standardized schema for transcripts

Open holtgrewe opened this issue 1 year ago • 3 comments

It would be useful to have a consensus schema for what a transcript is.

Prior art includes (but is certainly not limited to)

  • a branch somewhere in biocommons by @reece
  • cdot transcripts https://github.com/SACGF/cdot/wiki/Transcript-JSON-format
  • rust structs for deserializing cdot transcripts from json via serde-json in hgvs-rs: https://github.com/bihealth/hgvs-rs/blob/main/src/data/cdot/json.rs#L189
  • protobuf files used for storing cdot transcripts in mehari: https://github.com/bihealth/mehari/blob/main/src/db/create/txs/data.proto3

holtgrewe avatar May 04 '23 12:05 holtgrewe

This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 7 days.

github-actions[bot] avatar Nov 28 '23 01:11 github-actions[bot]

This issue was closed because it has been stalled for 7 days with no activity.

github-actions[bot] avatar Dec 05 '23 01:12 github-actions[bot]

This issue is stale because it has been open 90 days with no activity. Remove stale label or comment or this will be closed in 7 days.

github-actions[bot] avatar Mar 08 '24 01:03 github-actions[bot]