ntCard
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bcgsc
Estimating k-mer coverage histogram of genomics data
A user of RNA-Bloom had discovered a bug in ntCard version 1.2.2: https://github.com/bcgsc/RNA-Bloom/issues/43 Here are the first 10 lines from the output histogram file. ``` >head rnabloom_out/rnabloom_k17.hist F1 270 F0...
Would it be possible to add verbosity argument to the CLI to repress writing to stdout? I am running this over many gene clusters so the outputs start to add...
We discovered inconsistencies in kmer histograms on two experimental ONT datasets between uncompressed and compressed FASTA input files*. In independent runs and testing different k values (16,18,20,22,25), two gzipped FASTA...
getftype uses the read names to determine the file type ( 0 == fastq, 1 == fasta and 2 == sam). In practice read names should be considered free text...
As seen on [Debian bug #1049666], running the "clean" target under certain circumstances may cause the rule to fail with: rm: cannot remove 'test-reads.fq.gz': No such file or directory This...
Get the following compilation error when compiling ntHashIterator.hpp: Building on Fedora 36 gcc (GCC) 12.2.1 20221121 ``` g++ -DHAVE_CONFIG_H -I. -I./Common -I/home/jregalado/Software/ntCard -fopenmp -Wall -Wextra -Werror -O3 -MT ntcard-ntcard.o -MD...
dyld: cannot load 'rbxfpsunlocker_osx' (load command 0x80000034 is unknown) Abort trap: 6 This is the error code im getting when trying to run the program. I have the program in...
Hi, I'm a member of the Debian Med team who is maintaining ntCard as well as ntHash for Debian. When ntHash version was bumped to version 2.3.0 I assumed ntCard...
This patch resolves the following minor issue occurring during build configuration: ./configure: line 3675: test: syntax error: `-O2' unexpected This happens for example when exporting CXXFLAGS='-g -O2'.
Hi there! I am running into what seems to be essentially the same issue as #48 and #73, where my output looks like this ``` F1 14753176821204 F0 9223372036854775808 1...
