Albert Vilella

5'VDJ support would be great

1

It would be great to have Sockeye support 5'VDJ (which is a branch off the 5'GEX, for which there is already an issue ticket). As far as we I can...

calculating memory requirements based on bam file size

7

Is it possible to approximately calculate the memory requirements of EPIC based on the size or number of reads of the bam files given as input? This is in line...

Hi, We've curated a region of about 2Mb of a mammalian genome but there is still a gap in it, of unknown length, which could be 200kb or longer. The...

Hi, I found a large dataset listed on the EpiRR project which contains '.fractional.bw' bigwig files. I'd like to display these samples side-by-side with other samples for which I've already...

Hi, is there a way to convert 450k data to beta or pat format? I am interested in comparing the data from the Nature atlas paper and the data from...

bamutil clipoverlap module

6

* **Name of tool:** * BamUtil * **Tool description:** * bamUtil is a repository that contains several programs that perform operations on SAM/BAM files. * **Tool homepage:** * http://genome.sph.umich.edu/wiki/BamUtil *...

Supporting NextSeq and MiniSeq

12

Hi, what would be needed to support NextSeq and MiniSeq instruments? Anything I can provide?

/content/ file not found

1

The `dependencies.bsh` file has a fix for the END in pdb files that points to a `/content/` folder. Where does this come from? sed -i "s/pdb_lines.append('END')//" /content/alphafold/common/protein.py sed -i "s/pdb_lines.append('ENDMDL')//"...

Hi all, I've been using slack-cli for many years now, and I love it. One organization I've worked with though, only wants to deal with Microsoft Teams. Does anybody know...

Hi, I've modified the initial SandDance React example to load data from a .csv file and put the x and y values of the columns in a 2d scatterplot, with...