Albert Vilella

http://askubuntu.com/questions/73118/starcraft-ii-wine-ironhide

cannot import module BaggingClassifier

3

I tried to install scikit-mdr on an Ubuntu 14.04 Linux via pip install but got this error below. To make sure it wasn't a versions issue with scikit-learn, I did...

reduce 200x200000 into 200x1000

3

Hi, I have a ChIP-seq style dataset of RPKM values that I want to reduce from 200x200000 into 200x1000, so that I only end up with 1000 variables at the...

zero clipping at the beginning of the read

3

I googled for a tool like this and I was glad to find it. Thanks @tseemann ! Could an option be added so that `--start_max N` limits the reads that...

feature request any2fasta file.pdb

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Hi, For PDB files from protein structures, e.g. like those predicted by alphafold2, it would be great to have any2fasta work on PDB files. Initial simple request (pseudocode using csvtk,...

view -s FLOAT only works for 0.5 or below

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As far as I can tell, the -s FLOAT option only works for values of float where the decimal is equal or below .5, due to this commented line in...

aligning to CTOT+CTOB -- equivalent of bismark --pbat

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I understand that bwa-meth aligns to the c2t converted reference. Would it be possible to change bwa-meth also to align to the g2a converted reference? I believe this is what...

examples of the input files to the train process without AQUAS

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Hi, Are there examples of what the input files to the training process should look like if they haven't been produced by the AQUAS pipeline? E.g. starting from a file...

pairs.txt file empty, but pairs_from_bam/pair_ids.txt not empty

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See below: ``` LS4:/data2/RUN/RUN091/20230203_1010_MN41147_ANY366_3647ace0/fastq_all$ duplex_tools pair *.sam > pairs.txt [10:53:04 - FindPairs] Duplex tools version: 0.3.0 [10:53:04 - FindPairs] Creating seqsummary from bam 24324it [00:01, 13652.28it/s] [10:53:05 - FindPairs] Calculating...

dorado modified bases basecalling for Minion SQK-LSK109 run

2

# Issue Report ## Please describe the issue: Running dorado for basecalling including modified bases delivers MM and ML tags, but all MM tags have a '?', e.g. C+h? and...