Albert Vilella
Albert Vilella
We have a few cases of mAb/antigen pairs where we know there is or isn't binding, but we don't know the exact binding mechanism (epitope/paratope). If we want to increase...
I see this since this afternoon (UK time): ``` You can’t sign in because tosheets sent an invalid request. You can try again later, or contact the [developer](https://accounts.google.com/) about this...
Hi, I've followed the methods section in this paper: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1299-7 To generate `diamond blastx` hits from short-read WGS data, and I wanted an equivalent to megan/tools/blast2lca which it seems taxonkit...
Is there a way currently or any plans for searching a query pdb file against a database of pdb files to find interacting hits to the query structure? E.g. if...
Are the methods to plot the UMAP of the metagenomics dataset available? I would like to generate a similar UMAP representation for about ~200,000 protein structures. Any ideas where to...
Hi, I am running what I call a "competition analysis" where I am inputting 3 chains into Uni-Fold, one of them is an antigen, e.g. PD-1, the other is the...
Hi, I am running Uni-Fold on antibody-antigen pairs, where the antigen (chain A) is always the same, and the antibody sequences (chain B in each prediction) are very similar to...
I followed the instructions on how to build a .gtf file, for a simple use case where we have a CDS without introns from the ATG-to-the-stop codon. When I create...
I would like to associate a URL, e.g. a local Wasabi server, that loads an XML aln/tree file that has been created. E.g. `http://localhost:port?file=xyz.xml` Is this the best way to...
Hi, Is the current code supposed to allow the discrete graphics card 3D acceleration in flash applications on google-chrome or firefox? How can I check if it's the case?