Anton Korobeynikov
Anton Korobeynikov
Yes, this is a known problem. We are working on this, though it's a bit non-trivial given the amount of dependencies that are x86-only.
Actually, we do have a port for several months as of now. However, we cannot test is reliably due to some internal infrastructure issues... :(
> happy to help, what are the things need to be tested out? well, we're have a battery of internal tests on more than 100 different datasets / configurations :)...
@martin-g The port was done. And it will be a part of next SPAdes release. Note that you made output non-deterministic (see https://github.com/ablab/spades/compare/spades_3.15.5...martin-g:spades:linux-arm64-support#diff-ff9e3cc87fe5bc92da8881289b30ecd2205d0bc5a9b68428985699ee5e9169d5R266 for use of `lrand48`, etc.)
We just uploaded `next` branch that will be a base for next SPAdes releases. Please give it a try ;)
> I tried building it on Linux ARM64: This is outside the scope of the issue :) So far we do not support linux/aarch64 and did not test / port...
> Cmake says that it built around 91% before the error! Well, even 100% building does not mean it could run properly. But this is something we can try to...
> By resources you mean time+manpower or self-hosted Linux aarch64 runners ? Both. But mostly about man-power, as SPAdes team these days is just a company of volunteers devoting their...
Hello SPAdes 3.13.0 is ancient. Will you please give the latest SPAdes 3.15.4 a try?
Well, but in different place. I'd suspect you're running out of RAM