Anton Korobeynikov
Anton Korobeynikov
Will you please attach a reproducer?
Will you please attach your `/data/bigexpansion/vanessa/ragweed/2022-07-01_metagenomicAssembly/2022-09-05_ragweed_SPADES_modern_noBGI_pair1_pair2_merged.yaml` file?
It might happen that you hit the # of open files limit. Can you concatenate (in the same order of files) you left reads, your right reads and your merged...
> To make sure I understand right: with concatenating you mean to create one file containing all the pair1 reads, one file for all the pair2 reads and one file...
Hello Currently we do not have ETA on this functionality due to various reasons
Are you running in some kind of virtual machine?
@chuym726 you might want to open a separate issue
Please upload spades.log file as your were instructed in the issue / error message
This looks like an I/O problem. Does the problem reproduce with the restart?
This is the output for me (truncated for clarity): ``` conda create -n rgi520 -c bioconda -c defaults -c conda-forge rgi=5.2.0 Collecting package metadata (current_repodata.json): done Solving environment: failed with...