Anton Korobeynikov
Anton Korobeynikov
> I had specified 20 threads, so would that be the 20 instances of spades-hammer. > This dataset I am running is only 15 samples each with less than 8M...
I have no idea what does "thread" mean in the case of your cluster and job scheduler. You'd likely need to discuss this with your system administrator.
Well, you're clearly using `--threads 15` value. Both in cmdline and SPAdes was using 15 OpenMP threads.
SPAdes is always single instance (though could certainly utilize multiple threads on a single node). So, if you're seeing 20 instances, then something else is running that 20-30-40 instances for...
You are using ancient SPAdes 3.13.0. Does the problem reproduces with the latest SPAdes 3.15.5?
> I can not install the SPAdes 3.15.5 successfully. New issues happened. We do not maintain conda packages. You'd better report this to conda.
@swift-ci please test
Tagging @BradLarson
@swift-ci please test
@swift-ci please test