Artur Sannikov

The links you published are outdated. I guess, the function `plot_weights_fn` is now called `plot_weights`. I opened #148. There you will find the link to the latest reference manual. For...

I opened #157 for outdated links to tutorials.

While trying to create a more reproducible example with example data. I followed the checks from [line 32](https://github.com/bioFAM/MOFA2/blob/master/R/correlate_covariates.R#L32). ```R library(ggplot2) library(MOFA2) # Create example data data

Hey @lorenzwalthert, this issue also seems to cause problems downstream in nix package build process. For example, [GNOSIS](https://hydra.nixos.org/build/254462734) fails to build: ``` Running phase: unpackPhase unpacking source archive /nix/store/37y8yk9yzvbr3ps7yaj60l15va7hr9y6-GNOSIS_1.0.0.tar.gz source...

GNOSIS build should be fixed with https://github.com/NixOS/nixpkgs/pull/304466.

Hello @zdk123, are there any plans to publish this package on Bioconductor?

You now need to run `podman pull ghcr.io/js2264/oma:latest`.

@antagomir, currently the most up-to-date container is on `ghcr.io/microbiome/oma`, but it's private and requires logging in with `docker login ghcr.io`. I just tried it on a fresh install of Fedora...

I'm not even able to build an image on GitHub: https://github.com/artur-sannikov/OMA/actions/runs/10055341285/job/27791808192 because it fails due to API rate limiting (it's too big, I guess). I want to try standalone Docker...

We need to install Python to solve this issue. Uncomment three lines [here](https://github.com/microbiome/OMA/blob/devel/inst/pages/multiassay_ordination.qmd#L47). I opened #585.