Alexis Arnaudon

## Description See docstring for details, WIP for work with @PolinaL I'll add test/doc/changelog once stable ## Checklist: - [ ] Unit tests are added to cover the changes (skip...

Possible speed up?

9

By playing I noticed that efel's slowest part is not the feature computation but some initialisation. I did the following experiment: In examples/basic/basic_example1.py ``` 47 from time import time 48...

If one sets for example inv_fifth_ISI=0 in a trace with 3 spikes, it will bias the distributions of this feature towards 0, but IMO this should not do so.

to discuss, here is an example with mean_freq = 25 or so [trace_('C061128A4-SR-C1', 'IDRest_150_1').pdf](https://github.com/BlueBrain/eFEL/files/11061127/trace_.C061128A4-SR-C1.IDRest_150_1.pdf)

This is a very draft PR of trying to detect subthreshold oscillations

This could made possible to try experimental new features, or very specific ones which don't make sense to be used in general, but for a very specific project. It would...

improve sankey diagram

8

the sankey diagram ploting function works but is rudimentary. Some work to improve it is needed

Fix: Make bifurcation angles globally invariant

10

If one sets a non-[0,1,0] pia_direction, as it is the case for insitu synthesis, bifurcation angles are 'wrong', in the sense that they will depend on the pia_direction. As this...

Add context handling with accept/reject

17

This PR adds an accept/reject mechanisms to allow for external modification of section and trunk growths via the generic `context` object.