Aastha Pal

icon location Stanford University icon location Computational Biologist at Stanford Med

Results 45 comments of Aastha Pal

error in subsetCellChat function

Hi, Thank you for pointing out the error. I did the subsetcellchat but it is not a cellchat object anymore. I created three cellchat objects for three conditions and merged...

error in subsetCellChat function

Hi @sqjin. Thank you for your reply. I have three cell chat objects for three conditions. I took one of these and ran subset function and exactly how you suggested...

Warning messages useNames = NA is deprecated when running the slingshot

Hi, Exact same error. It is not a warning anymore. Any update on it? Thank you, Aastha

Warning messages useNames = NA is deprecated when running the slingshot

Hi, Thank you for quick response. I have checked the version of slingshot and it is 2.7.0. Still getting the same error. Not sure what's failing. ` sds

Warning messages useNames = NA is deprecated when running the slingshot

Hi, I just updated my R and now the error is: `sds

Warning messages useNames = NA is deprecated when running the slingshot

Yes, I did re-install. Will try to remove and install again.

preprocess_cds Error in function 'as_cholmod_sparse' not provided by package 'Matrix'

Hi, I tried to install the packages and still the error occurs. Any follow-ups? Thank you, Aastha

Error in graph_test function

Hi, I tried running graph_test and I get this error: `Error in (function (..., deparse.level = 1, make.row.names = TRUE, stringsAsFactors = FALSE, : invalid list argument: all variables should...

Error in graph_test function

@substantia-nigra Yes, I was able to fix this. I think re running the fdata(cds) solved the error. Also updated my packages. Hope this helps. `#LOAD THE OBJECT cds

CCC between condition

@dbdimitrov thank you. I wonder if it would also support two conditions only? I have pre and post paired samples and another condition which is post only samples. Would you...