Aastha Pal

error in running jupyter in singularity

3

Hi, I am trying to run a jupyter notebook in singularity on HPC but i am not able to connect with the HPC remote host. I have the path with...

CCC between condition

3

Hi, Thank you for the package. I have three conditions and in each condition i have three samples. I want to look at communication between three major clusters. I followed...

split.by error in Clustered_DotPlot function

3

Hi, Thank you for the package. I was able to use the function Clustered_DotPlot without using split.by parameter. I want to look at the expression at different timepoints and time2...

Hi, Thank you for the wonderful package. I have got this plot for two conditions that I am comparing (untreated and treated). I wonder what is the order of this...

Hi, I am trying to add some sort of checkpointing to my slurm scripts so i could rerun the script and the programme can run from where it got dropped...

Hi @bnsreenu, This is my first time analysing bioimages and I am trying out different models but started with STARdist. This is IF image and I want to perform nuclei...

AttributeError: module 'haiku' has no attribute 'custom_creator'

1

Hi, I am trying to run AF-multimer and my script ran for about 3ish hours and I get the following error. Not sure how to resolve this and would appreciate...

Hi, I am trying to run alphafold multimer using singularity and even after giving all the necessary flags, I get an error which I am not sure about. Would appreciate...

Hi, I am trying to add some sort of checkpointing to my slurm scripts so I could rerun the script and the colabfold can run from where it got dropped...

Hi, Thank you fro the package. I was able to run this on my integrated dataset to see how pure each of the clusters are but when I tried to...