Aastha Pal
Aastha Pal
Hi, I have three treatment groups (Untreated, treated and mixed) and untreated and mixed has 4 samples and treated has 3 sample. I want to test for the sample specific...
Thank you for prompt response. I tried it with RNA and integrated assay. both look the same. `complex_dotplot_single(seu_obj =sobj, feature = "gene1", groups = "conditon", do.scale=F)` doesn't help with do.scale...
@HaojiaWu Thank you. How do you think i could get it working for now? I used this for looking at the expression of other genes. Do you think it is...
Hi, I have used this package before and it worked but it is no more working. I am not sure why as there is literally no error but I am...
Hi @samuel-marsh , Do you think join layers would solve the issue? Best, Aastha
What do you mean by unifying dimensionality reduction?
Oh got it. Thank you. So, running the dimentionality reduction on the merged object would solve this issue hopefully!?
No, it didn't solve the issue. I did the whole analysis and yet the same thing. `An object of class Seurat 31061 features across 51442 samples within 2 assays Active...
Hi, I have three conditions and I created three cellchat objects to look communication between specific clusters at individual treatment level. BUT I am getting an error while using subsetCellChat:...
@sqjin, sorry to bother but I am still getting the same error even when I ran the subset function on individual cellchat object (one object for one condition). I am...