Aastha Pal comments

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                                            Aastha Pal

Is it possible to use Scanpy Generated UMAP for Monocle3 trajectory analysis?

Hi, I have the same error. `Error in cds_from_seurat@preprocess_aux$gene_loadings

plot_genes_in_pseudotime gives expressionFamily error

Hi, I reinstalled the development version, still didn't work. Wonder if either of you were able to fix it? Thanks!

OWL-ViT inference playround: ModuleNotFoundError: No module named 'jax.experimental.gda_serialization'

Hi, I have the exact same error. Any update on fixing this? Thank you

allowWGCNAThreads() use instead of enableWGCNAThreads() for RStudio, MacOSX

Hi, I have the exact error and I tried enableWGCNAThreads() before running my code, but that didn't help. Were you able to fix it? If yes, could you help? `>...

allowWGCNAThreads() use instead of enableWGCNAThreads() for RStudio, MacOSX

@bpyenson, I am sorry, I misread that. Yes, fixed. Thank you!

Error in if (!(multi.group.by %in% names([email protected]))) { : argument is of length zero

Hi, I think there is some issue with SetDatExpr function. `seurat_obj

split.by error in Clustered_DotPlot function

Hi @samuel-marsh, Thank you for following up. No, I using multiple genes. Here is the output of traceback() `5: stop("undefined columns selected") 4: `[.data.frame`(percent_mat, , idx) 3: percent_mat[, idx] 2:...

split.by error in Clustered_DotPlot function

Hi @samuel-marsh , I think I got it working. Thank you for your time.

Error when plotting regulon activity by cell type

Hi, I am not able to run this for some reason, here's my code and error, can someone help? Thanks ``` regulonActivity_byCellType

Proportion test between more than 2 conditons?

Hi, I would like to follow up on this question?