Andreas Poehlmann
Andreas Poehlmann
Draft while work in progress. Recommended way for initial support is going the kerchunk route. If we provide the tiffslide properties in the zarrstore this format should already be supported....
Should accumulate a few different leica files to ensure better openslide compatibility regarding metadata
I believe the way openslide calculates downsamples is not correct. I assume that there is a reason why the downsample factor in openslide is calculated as seen below. But my...
Everything is in place to provide nvjpeg decode directly to gpu memory. I just need to find some spare time to implement the required glue... - [ ] provide compatible...
A work in progress PR for supporting ventana images. Would close #37 Draft until it's working... - [ ] need to recover correct absolute coords - [ ] need to...
``` ts_slide = TiffSlide('OS-2.bif'), os_slide = OpenSlide('OS-2.bif') def test_level_dimensions(ts_slide, os_slide): > assert ts_slide.level_dimensions == os_slide.level_dimensions E AssertionError: assert ((128000, 829...0, 2600), ...) == ((114943, 763...2, 2386), ...) E At index...
openslide supports mirax. Adding this so that it's mentioned in the issue tracker.
``` ts_slide = TiffSlide('OS-3.ndpi'), os_slide = OpenSlide('OS-3.ndpi') def test_level_count(ts_slide, os_slide): > assert ts_slide.level_count == os_slide.level_count E assert 10 == 13 E +10 E -13 ```
This came up as a request (initial solution) from #21 While this might usually not required if the default behavior of TiffSlide returns the same series as openslide, it could...
Unfortunately, tiffslide fails again in parallel mode, this time using pytorch dataloaders. This is a very common technique used in WSI processing with pytorch, the only difference is that it...