Andreas Poehlmann
Andreas Poehlmann
So currently there's not a particularly nice way to accomplish this in qupath... refer to [this image.sc post](https://forum.image.sc/t/best-way-to-display-additional-information-as-overlay/40901) to see two additional options. option (1) overlays a whole image on...
Provide a way to tell a `QuPathProject` to move Image files to faster locations dynamically. Hypothetical interface: ```python with QuPathProject("./myproject") as qp: qp.cache_add(path="/mnt/super_fast_ssd/", auto_use=False) # auto_use: explicitly ask for usage...
There's multiple places where metadata can be put that relates to an image. QuPath has 1. ProjectImageEntry Metadata, accessible via `paquo.image.QuPathProjectImageEntry.metadata`. 2. ImageData Properties, accessible via `paquo.image.QuPathProjectImageEntry.properties` I haven't managed...
Allow to use shapely geometries to query for other annotations. return image data in python np, cv2, ... (itemized from #4 )
Hi @cgohlke I ran into another svs file with malformed description metadata that prevents `svs_description_metadata` to parse it correctly: ```python import fsspec from tifffile import TiffFile from tifffile.tifffile import svs_description_metadata...
Dear QuPath developers, Quite some time ago a user of `paquo` reported a bug with network share URIs on windows, see: https://github.com/bayer-science-for-a-better-life/paquo/issues/65 This PR get's rid of the immediate issue...
Just a bit of convenience in case people want to stay in Python.
These things would help a lot with the viewport definer: - edit/view all viewports at once (different colours) - allow to remove points - plot points more prominent
It would make the calibration a lot easier if any of the following things would be implemented: [ ] extrinsics: different color for displayed points (and the cursor should be...
With Python=3.12 the Py limited API will have buffer support which should allow to build a cseabreeze module that is supported by all versions 3.12 and newer. Once we extract...