Andreas Poehlmann
Andreas Poehlmann
> We should provide consistent defaults for the colormaps. For example, for each organ type, have the same lesions always mapping to the same colors, plus having a "normal vs...
Need to test how Qupath handles this.
need to investigate if that is possible. It might be. We could write a groovy script that watches the directory and reloads the project when qpdata files have been updated...
I think I should implement something like a closed state explicitly. with statements dont work well with a jupyter workflow
### Move whatever we can to pyproject.toml. > windows pytest output is now spam free: [a5b5cb6](https://github.com/bayer-science-for-a-better-life/paquo/commit/a5b5cb622ad0154b4429207bbc632704d352fcbd) can we use pyproject.toml instead of pytest.ini? _Originally posted by @sdvillal in https://github.com/bayer-science-for-a-better-life/paquo/issues/23#issuecomment-666252819_
from @vankhoa21991 ```python --------------------------------------------------------------------------- ValueError Traceback (most recent call last) in ----> 1 qp = QuPathProject('./my_qupath_project', mode="a") 2 qp.images # 199 raise ValueError("will only create projects in empty directories") 200...
For a few specific UI things it might be nice if paquo offered a way of populating the scripts folder. minimal implementation would just be: ```python # this is not...
## Update So it seems as if deleting an image file on windows in the same session that is was added via `QuPathProject.add_image` causes a Permission exception on Windows. Causes...
I'm investigating why some tiffs under macos don't work. At the beginning I assumed it's files size, but it turns out that the ones in my local test set that...
PathClasses in QuPath are uniquely identified by their name and their ancestor classes. This is case sensitive and names may not contain ":". We can fill a project's path_classes with...