Andreas Poehlmann

Results 107 issues of Andreas Poehlmann

- [ ] create pado dataset from urlpath with images - [ ] ingest csv as metadata into pado dataset - [ ] ingest geojson (or qpproj?) as annotations into...

⭐ enhancement

We provide a `Mapping[ImageId, PadoItem]` interface with `__getitem__` and `__len__` in which we correctly (and intuitively) raise `KeyError(image_id)` Now additionally we'd like to provide a `Sequence[PadoItem]` interface, again via `__getitem__`...

🚧 refactor

This would be a step closer to allowing bootstrapping of datasets via the pado cli. dependents would register themselves via entrypoints, and the pado cli would provide a bootstrap option...

⭐ enhancement

Specifically for ImagePredictions but applies equally to other provider types: Since it is unlikely that predictions will all be made at the same time, it will be useful to either...

⭐ enhancement

This relates to viewers implemented to show pado image predictions. It's actually not so complicated. - [ ] write pyramidal zarr with as many dimensions as you want - [...

This is essential to allow iterative model improvement without having to recreate empty datasets.

⭐ enhancement

The easiest way off the top of my head would be: - [ ] convert to PNG dzi - [ ] store PNG dzi in uncompressed tar - [ ]...

⭐ enhancement

This could improve performance in cased only one datatype is needed.

```python ds = PadoDataset(None, mode="w") ds.ingest_obj(ds0) ds.ingest_obj(ds1) ``` returns an error. Temporary solution ```python ds.ingest_obj(ImageProvider(ds1.images, identifier="something_else"))) ds.ingest_obj(MetadataProvider(ds1.metadata, identifier="something_else"))) ... ``` Todo: - [ ] I need to define how two...

🐛 bug

maybe just a function ```python def is_all_local(obj: PadoDataset | ImageProvider) -> bool: ... ``` Or provide many of those "asserts" in a submodule `pado.asserts`

⭐ enhancement
🦁 good first issue
🦸 help wanted